IL_6P5K_198

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_198 not in the Motif Atlas

Homologous match to IL_5TBW_091

Geometric discrepancy: 0.0937

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6P5K|1|5|G|3895
6P5K|1|5|C|3896
6P5K|1|5|G|3897
6P5K|1|5|G|3898
*
6P5K|1|5|U|4563
6P5K|1|5|A|4564
6P5K|1|5|C|4565

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AO

uL13