3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GCGG*UAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_198 not in the Motif Atlas
Homologous match to IL_5TBW_091
Geometric discrepancy: 0.0937
The information below is about IL_5TBW_091
Detailed Annotation
Major groove platform with extra pair
Broad Annotation
Major groove platform
Motif group
IL_63450.5
Basepair signature
cWW-cHS-cWW-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6P5K|1|5|G|3895
6P5K|1|5|C|3896
6P5K|1|5|G|3897
6P5K|1|5|G|3898
*
6P5K|1|5|U|4563
6P5K|1|5|A|4564
6P5K|1|5|C|4565

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AB
uL3
Chain AO
uL13

Coloring options:


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