IL_6P5K_204

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_204 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.2529

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6P5K|1|5|U|3950
6P5K|1|5|G|3951
6P5K|1|5|A|3952
*
6P5K|1|5|U|4060
6P5K|1|5|G|4061
6P5K|1|5|A|4062

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AK

uL1

Chain Ai

eL36