IL_6P5K_212
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_212 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.2619
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6P5K|1|5|U|4295
6P5K|1|5|U|4296
6P5K|1|5|G|4297
6P5K|1|5|A|4298
*
6P5K|1|5|U|4312
6P5K|1|5|A|4313
6P5K|1|5|C|4314
6P5K|1|5|A|4315
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AD
- uL18
- Chain AQ
- eL18
- Chain AT
- eL21
- Chain Ab
- eL29
- Chain Ao
- eL42
Coloring options: