IL_6P5K_217

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6P5K|1|5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_217 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0815

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6P5K|1|5|G|4405
6P5K|1|5|U|4406
6P5K|1|5|G|4407
*
6P5K|1|5|U|4435
6P5K|1|5|U|4436
6P5K|1|5|U|4437
6P5K|1|5|U|4438
6P5K|1|5|U|4439

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AI

uL16