IL_6P5K_220

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6P5K|1|5|G|4522, 6P5K|1|5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_220 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0923

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6P5K|1|5|C|4456
6P5K|1|5|U|4457
6P5K|1|5|C|4458
*
6P5K|1|5|G|4520
6P5K|1|5|U|4521
6P5K|1|5|G|4522
6P5K|1|5|A|4523
6P5K|1|5|G|4524

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AV

uL14