IL_6P5K_234

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6P5K|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_234 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2248

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6P5K|1|5|G|4680
6P5K|1|5|A|4681
6P5K|1|5|U|4682
6P5K|1|5|U|4683
6P5K|1|5|A|4684
6P5K|1|5|U|4685
*
6P5K|1|5|A|4705
6P5K|1|5|G|4706
6P5K|1|5|A|4707
6P5K|1|5|A|4708
6P5K|1|5|U|4709
6P5K|1|5|C|4710

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AH

uL6

Chain AO

uL13

Chain Am

eL40