IL_6P5K_238

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCC*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_238 not in the Motif Atlas

Geometric match to IL_4K27_003

Geometric discrepancy: 0.2155

The information below is about IL_4K27_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

6P5K|1|5|U|4885
6P5K|1|5|C|4886
6P5K|1|5|C|4887
6P5K|1|5|C|4888
*
6P5K|1|5|G|4931
6P5K|1|5|U|4932
6P5K|1|5|C|4933
6P5K|1|5|A|4934

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain AM

L14e