IL_6P5K_270

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCA*UGC

Length

8 nucleotides

Bulged bases

6P5K|1|2|G|1330, 6P5K|1|2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_270 not in the Motif Atlas

Geometric match to IL_7LYF_004

Geometric discrepancy: 0.3292

The information below is about IL_7LYF_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6P5K|1|2|G|1328
6P5K|1|2|U|1329
6P5K|1|2|G|1330
6P5K|1|2|C|1331
6P5K|1|2|A|1332
*
6P5K|1|2|U|1499
6P5K|1|2|G|1500
6P5K|1|2|C|1501

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain E

uS3

Chain V

uS10