IL_6P5K_278

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GCGGC

Length

9 nucleotides

Bulged bases

6P5K|1|5|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_278 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.1919

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6P5K|1|5|G|457
6P5K|1|5|C|458
6P5K|1|5|C|459
6P5K|1|5|C|460
*
6P5K|1|5|G|695
6P5K|1|5|C|696
6P5K|1|5|G|697
6P5K|1|5|G|698
6P5K|1|5|C|699

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain Ar

eL28