IL_6P5K_289

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_289 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.144

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6P5K|1|5|G|4400
6P5K|1|5|G|4401
6P5K|1|5|C|4402
6P5K|1|5|U|4403
*
6P5K|1|5|G|4440
6P5K|1|5|A|4441
6P5K|1|5|U|4442
6P5K|1|5|C|4443
6P5K|1|5|C|4444

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AI

uL16

Chain Ab

eL29