3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGCU*GAUCC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_289 not in the Motif Atlas
Homologous match to IL_8C3A_111
Geometric discrepancy: 0.144
The information below is about IL_8C3A_111
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50458.1
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
5

Unit IDs

6P5K|1|5|G|4400
6P5K|1|5|G|4401
6P5K|1|5|C|4402
6P5K|1|5|U|4403
*
6P5K|1|5|G|4440
6P5K|1|5|A|4441
6P5K|1|5|U|4442
6P5K|1|5|C|4443
6P5K|1|5|C|4444

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AB
uL3
Chain AI
uL16
Chain Ab
eL29

Coloring options:


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