IL_6P5K_292

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCA*UCU

Length

7 nucleotides

Bulged bases

6P5K|1|5|C|5013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_292 not in the Motif Atlas

Geometric match to IL_4V88_395

Geometric discrepancy: 0.2368

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6P5K|1|5|A|5011
6P5K|1|5|G|5012
6P5K|1|5|C|5013
6P5K|1|5|A|5014
*
6P5K|1|5|U|5035
6P5K|1|5|C|5036
6P5K|1|5|U|5037

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AW

eL24