IL_6P5N_022
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 6P5N|1|2|U|361, 6P5N|1|2|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_022 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.1628
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6P5N|1|2|U|359
6P5N|1|2|A|360
6P5N|1|2|U|361
6P5N|1|2|C|362
6P5N|1|2|A|363
6P5N|1|2|A|364
*
6P5N|1|2|U|396
6P5N|1|2|G|397
6P5N|1|2|A|398
6P5N|1|2|C|399
6P5N|1|2|C|400
6P5N|1|2|A|401
6P5N|1|2|C|402
6P5N|1|2|G|403
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- eS8
- Chain M
- uS17
- Chain Y
- uS12
Coloring options: