IL_6P5N_028

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

6P5N|1|2|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_028 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.148

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6P5N|1|2|C|491
6P5N|1|2|C|492
6P5N|1|2|A|493
6P5N|1|2|C|494
6P5N|1|2|U|495
6P5N|1|2|C|496
*
6P5N|1|2|G|506
6P5N|1|2|G|507
6P5N|1|2|A|508
6P5N|1|2|G|509

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24