IL_6P5N_073

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

6P5N|1|2|A|1580, 6P5N|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5N_073 not in the Motif Atlas

Geometric match to IL_5J7L_055

Geometric discrepancy: 0.2436

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6P5N|1|2|G|1550
6P5N|1|2|U|1551
6P5N|1|2|G|1552
6P5N|1|2|C|1553
6P5N|1|2|C|1554
6P5N|1|2|U|1555
6P5N|1|2|A|1556
6P5N|1|2|C|1557
6P5N|1|2|C|1558
*
6P5N|1|2|G|1577
6P5N|1|2|U|1578
6P5N|1|2|A|1579
6P5N|1|2|A|1580
6P5N|1|2|C|1581
6P5N|1|2|C|1582

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain R

uS9

Chain V

uS10

Chain e

eS29