IL_6P5N_204
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUGAG*CUGAUCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5N_204 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3834
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6P5N|1|5|C|3948
6P5N|1|5|A|3949
6P5N|1|5|U|3950
6P5N|1|5|G|3951
6P5N|1|5|A|3952
6P5N|1|5|G|3953
*
6P5N|1|5|C|4059
6P5N|1|5|U|4060
6P5N|1|5|G|4061
6P5N|1|5|A|4062
6P5N|1|5|U|4063
6P5N|1|5|C|4064
6P5N|1|5|G|4065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AG
- eL8
- Chain AK
- uL1
- Chain Ai
- eL36
Coloring options: