3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGCAUGG*UCUGUGAUG
Length
16 nucleotides
Bulged bases
6P5N|1|2|C|1331, 6P5N|1|2|U|1494, 6P5N|1|2|G|1497
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5N_263 not in the Motif Atlas
Homologous match to IL_8P9A_439
Geometric discrepancy: 0.1093
The information below is about IL_8P9A_439
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_86012.1
Basepair signature
cWW-tHS-tWH-cWH-cWW-L-L-cWW
Number of instances in this motif group
1

Unit IDs

6P5N|1|2|U|1329
6P5N|1|2|G|1330
6P5N|1|2|C|1331
6P5N|1|2|A|1332
6P5N|1|2|U|1333
6P5N|1|2|G|1334
6P5N|1|2|G|1335
*
6P5N|1|2|U|1492
6P5N|1|2|C|1493
6P5N|1|2|U|1494
6P5N|1|2|G|1495
6P5N|1|2|U|1496
6P5N|1|2|G|1497
6P5N|1|2|A|1498
6P5N|1|2|U|1499
6P5N|1|2|G|1500

Current chains

Chain 2
18S rRNA

Nearby chains

Chain 1
IAPV-IRES
Chain Aq
Eukaryotic peptide chain release factor subunit 1
Chain E
uS3
Chain L
eS10
Chain V
uS10
Chain e
eS29

Coloring options:


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