3D structure

PDB id
6PC6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 47
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
6PC6|1|I|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6PC6_036 not in the Motif Atlas
Homologous match to IL_5J7L_282
Geometric discrepancy: 0.0813
The information below is about IL_5J7L_282
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_57744.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
22

Unit IDs

6PC6|1|I|G|1031
6PC6|1|I|A|1032
6PC6|1|I|U|1033
6PC6|1|I|G|1034
*
6PC6|1|I|C|1121
6PC6|1|I|G|1122
6PC6|1|I|C|1123

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain J
5S ribosomal RNA; 5S rRNA

Coloring options:


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