IL_6PC6_110

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6PC6|1|I|U|846, 6PC6|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC6_110 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.131

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

6PC6|1|I|A|844
6PC6|1|I|A|845
6PC6|1|I|U|846
6PC6|1|I|U|847
6PC6|1|I|C|848
*
6PC6|1|I|G|930
6PC6|1|I|U|931
6PC6|1|I|U|932
6PC6|1|I|A|933
6PC6|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains