IL_6PC8_032

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6PC8|1|I|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_032 not in the Motif Atlas

Homologous match to IL_4WF9_036

Geometric discrepancy: 0.1059

The information below is about IL_4WF9_036

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6PC8|1|I|C|998
6PC8|1|I|U|999
6PC8|1|I|A|1000
6PC8|1|I|A|1001
6PC8|1|I|G|1002
*
6PC8|1|I|C|1153
6PC8|1|I|G|1154
6PC8|1|I|A|1155
6PC8|1|I|A|1156
6PC8|1|I|G|1157

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA