IL_6PC8_047

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAACG*CGGG

Length

10 nucleotides

Bulged bases

6PC8|1|I|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_047 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3545

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6PC8|1|I|C|1319
6PC8|1|I|C|1320
6PC8|1|I|A|1321
6PC8|1|I|A|1322
6PC8|1|I|C|1323
6PC8|1|I|G|1324
*
6PC8|1|I|C|1330
6PC8|1|I|G|1331
6PC8|1|I|G|1332
6PC8|1|I|G|1333

Current chains

Chain I

23S ribosomal RNA

Nearby chains