IL_6PC8_111

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGAACUG*CUAAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PC8_111 not in the Motif Atlas

Homologous match to IL_4WF9_008

Geometric discrepancy: 0.1212

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6PC8|1|I|G|187
6PC8|1|I|G|188
6PC8|1|I|G|189
6PC8|1|I|A|190
6PC8|1|I|A|191
6PC8|1|I|C|192
6PC8|1|I|U|193
6PC8|1|I|G|194
*
6PC8|1|I|C|201
6PC8|1|I|U|202
6PC8|1|I|A|203
6PC8|1|I|A|204
6PC8|1|I|G|205
6PC8|1|I|U|206
6PC8|1|I|A|207
6PC8|1|I|C|208
6PC8|1|I|C|209

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15