IL_6PCH_109

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6PCH|1|I|U|846, 6PCH|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCH_109 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1615

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

6PCH|1|I|A|844
6PCH|1|I|A|845
6PCH|1|I|U|846
6PCH|1|I|U|847
6PCH|1|I|C|848
*
6PCH|1|I|G|930
6PCH|1|I|U|931
6PCH|1|I|U|932
6PCH|1|I|A|933
6PCH|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains