IL_6PCQ_097

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6PCQ|1|I|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCQ_097 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1125

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|C|2636
6PCQ|1|I|U|2637
6PCQ|1|I|G|2638
6PCQ|1|I|A|2639
6PCQ|1|I|G|2640
*
6PCQ|1|I|C|2774
6PCQ|1|I|G|2775
6PCQ|1|I|A|2776
6PCQ|1|I|G|2777
6PCQ|1|I|A|2778
6PCQ|1|I|U|2779
6PCQ|1|I|G|2780
6PCQ|1|I|A|2781
6PCQ|1|I|G|2782

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13