IL_6PCR_094

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6PCR|1|I|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_094 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.097

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6PCR|1|I|C|2636
6PCR|1|I|U|2637
6PCR|1|I|G|2638
6PCR|1|I|A|2639
6PCR|1|I|G|2640
*
6PCR|1|I|C|2774
6PCR|1|I|G|2775
6PCR|1|I|A|2776
6PCR|1|I|G|2777
6PCR|1|I|A|2778
6PCR|1|I|U|2779
6PCR|1|I|G|2780
6PCR|1|I|A|2781
6PCR|1|I|G|2782

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13