IL_6PCR_097

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6PCR|1|I|U|2689, 6PCR|1|I|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_097 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0857

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

6PCR|1|I|U|2687
6PCR|1|I|G|2688
6PCR|1|I|U|2689
6PCR|1|I|U|2690
6PCR|1|I|C|2691
*
6PCR|1|I|G|2718
6PCR|1|I|G|2719
6PCR|1|I|U|2720
6PCR|1|I|A|2721
6PCR|1|I|G|2722

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3