IL_6PCR_110

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6PCR|1|I|U|846, 6PCR|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCR_110 not in the Motif Atlas

Geometric match to IL_8B0X_179

Geometric discrepancy: 0.1438

The information below is about IL_8B0X_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

6PCR|1|I|A|844
6PCR|1|I|A|845
6PCR|1|I|U|846
6PCR|1|I|U|847
6PCR|1|I|C|848
*
6PCR|1|I|G|930
6PCR|1|I|U|931
6PCR|1|I|U|932
6PCR|1|I|A|933
6PCR|1|I|U|934

Current chains

Chain I

23S ribosomal RNA

Nearby chains