IL_6PCS_065

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6PCS|1|I|A|1801, 6PCS|1|I|C|1816, 6PCS|1|I|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCS_065 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0596

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6PCS|1|I|U|1798
6PCS|1|I|G|1799
6PCS|1|I|C|1800
6PCS|1|I|A|1801
6PCS|1|I|A|1802
6PCS|1|I|A|1803
6PCS|1|I|C|1804
*
6PCS|1|I|G|1813
6PCS|1|I|G|1814
6PCS|1|I|A|1815
6PCS|1|I|C|1816
6PCS|1|I|G|1817
6PCS|1|I|U|1818
6PCS|1|I|A|1819
6PCS|1|I|U|1820
6PCS|1|I|A|1821

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2