IL_6PCT_096

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUCACU*AAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PCT_096 not in the Motif Atlas

Geometric match to IL_5TBW_062

Geometric discrepancy: 0.2966

The information below is about IL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51005.1

Basepair signature

cWW-L-R-tWH-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6PCT|1|I|A|2679
6PCT|1|I|U|2680
6PCT|1|I|C|2681
6PCT|1|I|A|2682
6PCT|1|I|C|2683
6PCT|1|I|U|2684
*
6PCT|1|I|A|2725
6PCT|1|I|A|2726
6PCT|1|I|A|2727
6PCT|1|I|U|2728

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3