IL_6PJ6_048

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAACG*CGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PJ6_048 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3694

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6PJ6|1|I|C|1319
6PJ6|1|I|C|1320
6PJ6|1|I|A|1321
6PJ6|1|I|A|1322
6PJ6|1|I|C|1323
6PJ6|1|I|G|1324
*
6PJ6|1|I|C|1330
6PJ6|1|I|G|1331
6PJ6|1|I|G|1332
6PJ6|1|I|G|1333

Current chains

Chain I

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L22

Chain b

50S ribosomal protein L23