IL_6PJ6_070
3D structure
- PDB id
- 6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cryo-EM structure of E.coli 50S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 6PJ6|1|I|A|1801, 6PJ6|1|I|C|1816, 6PJ6|1|I|U|1820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6PJ6_070 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.0523
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6PJ6|1|I|U|1798
6PJ6|1|I|G|1799
6PJ6|1|I|C|1800
6PJ6|1|I|A|1801
6PJ6|1|I|A|1802
6PJ6|1|I|A|1803
6PJ6|1|I|C|1804
*
6PJ6|1|I|G|1813
6PJ6|1|I|G|1814
6PJ6|1|I|A|1815
6PJ6|1|I|C|1816
6PJ6|1|I|G|1817
6PJ6|1|I|U|1818
6PJ6|1|I|A|1819
6PJ6|1|I|U|1820
6PJ6|1|I|A|1821
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain K
- 50S ribosomal protein L2
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