IL_6POM_001

3D structure

PDB id

6POM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex with tRNA-Gly

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CAGUGAG*UGAG

Length

11 nucleotides

Bulged bases

6POM|1|A|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6POM_001 not in the Motif Atlas

Geometric match to IL_4LCK_006

Geometric discrepancy: 0.2901

The information below is about IL_4LCK_006

Detailed Annotation

Kink-turn from T-box riboswitch

Broad Annotation

Kink-turn

Motif group

IL_51265.4

Basepair signature

cWW-L-tSH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6POM|1|A|C|17
6POM|1|A|A|18
6POM|1|A|G|19
6POM|1|A|U|20
6POM|1|A|G|21
6POM|1|A|A|22
6POM|1|A|G|23
*
6POM|1|A|U|107
6POM|1|A|G|108
6POM|1|A|A|109
6POM|1|A|G|110

Current chains

Chain A

T-box GlyQS leader (155-MER)

Nearby chains