IL_6POM_004
3D structure
- PDB id
- 6POM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex with tRNA-Gly
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.9 Å
Loop
- Sequence
- GUGGAACCG*UC
- Length
- 11 nucleotides
- Bulged bases
- 6POM|1|A|C|160
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6POM_004 not in the Motif Atlas
- Geometric match to IL_6PMO_001
- Geometric discrepancy: 0.2611
- The information below is about IL_6PMO_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45930.1
- Basepair signature
- cWW-L-cWW-L-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
6POM|1|A|G|154
6POM|1|A|U|155
6POM|1|A|G|156
6POM|1|A|G|157
6POM|1|A|A|158
6POM|1|A|A|159
6POM|1|A|C|160
6POM|1|A|C|161
6POM|1|A|G|162
*
6POM|1|A|U|177
6POM|1|A|C|178
Current chains
- Chain A
- T-box GlyQS leader (155-MER)
Nearby chains
- Chain B
- Transfer RNA; tRNA
Coloring options: