IL_6PPF_013

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCAC*GAGUGAAAGAGAUC

Length

18 nucleotides

Bulged bases

6PPF|1|A|G|550, 6PPF|1|A|U|554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_013 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1832

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

6PPF|1|A|G|528
6PPF|1|A|C|529
6PPF|1|A|A|530
6PPF|1|A|C|531
*
6PPF|1|A|G|542
6PPF|1|A|A|543
6PPF|1|A|G|544
6PPF|1|A|U|545
6PPF|1|A|G|546
6PPF|1|A|A|547
6PPF|1|A|A|548
6PPF|1|A|A|549
6PPF|1|A|G|550
6PPF|1|A|A|551
6PPF|1|A|G|552
6PPF|1|A|A|553
6PPF|1|A|U|554
6PPF|1|A|C|555

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain T

50S ribosomal protein L23

Chain U

50S ribosomal protein L24