IL_6PPF_038

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6PPF|1|A|U|1251

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6PPF_038 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1737

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

6PPF|1|A|C|1248
6PPF|1|A|U|1249
6PPF|1|A|G|1250
6PPF|1|A|U|1251
6PPF|1|A|G|1252
6PPF|1|A|A|1253
6PPF|1|A|A|1254
6PPF|1|A|G|1255
*
6PPF|1|A|U|1274
6PPF|1|A|G|1275
6PPF|1|A|G|1276
6PPF|1|A|A|1277
6PPF|1|A|G|1278

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20