IL_6Q8Y_091
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_091 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.0794
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BQ|C|82
6Q8Y|1|BQ|U|83
6Q8Y|1|BQ|U|84
6Q8Y|1|BQ|A|85
6Q8Y|1|BQ|G|86
6Q8Y|1|BQ|U|87
6Q8Y|1|BQ|A|88
6Q8Y|1|BQ|A|89
*
6Q8Y|1|BQ|U|97
6Q8Y|1|BQ|G|98
6Q8Y|1|BQ|A|99
6Q8Y|1|BQ|A|100
6Q8Y|1|BQ|G|101
6Q8Y|1|BQ|C|102
6Q8Y|1|BQ|G|103
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
- Chain BB
- 60S ribosomal protein L18-A
- Chain BE
- 60S ribosomal protein L4-A
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