IL_6Q8Y_123
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_123 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.0709
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6Q8Y|1|BQ|G|991
6Q8Y|1|BQ|A|992
6Q8Y|1|BQ|G|993
6Q8Y|1|BQ|G|994
6Q8Y|1|BQ|U|995
6Q8Y|1|BQ|A|996
6Q8Y|1|BQ|A|997
*
6Q8Y|1|BQ|U|1052
6Q8Y|1|BQ|A|1053
6Q8Y|1|BQ|A|1054
6Q8Y|1|BQ|A|1055
6Q8Y|1|BQ|U|1056
6Q8Y|1|BQ|A|1057
6Q8Y|1|BQ|U|1058
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain BD
- 60S ribosomal protein L10
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BO
- 60S ribosomal protein L7-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
Coloring options: