IL_6Q8Y_128

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCCG*UGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_128 not in the Motif Atlas

Homologous match to IL_5TBW_043

Geometric discrepancy: 0.2187

The information below is about IL_5TBW_043

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_71110.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6Q8Y|1|BQ|G|1013
6Q8Y|1|BQ|U|1014
6Q8Y|1|BQ|U|1015
6Q8Y|1|BQ|C|1016
6Q8Y|1|BQ|C|1017
6Q8Y|1|BQ|G|1018
*
6Q8Y|1|BQ|U|1034
6Q8Y|1|BQ|G|1035
6Q8Y|1|BQ|A|1036
6Q8Y|1|BQ|C|1037

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L11-B

Chain BD

60S ribosomal protein L10

Chain BI

60S ribosomal protein L5