IL_6Q8Y_135
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|1191, 6Q8Y|1|BQ|C|1192, 6Q8Y|1|BQ|C|1316, 6Q8Y|1|BQ|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_135 not in the Motif Atlas
- Homologous match to IL_8C3A_054
- Geometric discrepancy: 0.1018
- The information below is about IL_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BQ|C|1187
6Q8Y|1|BQ|U|1188
6Q8Y|1|BQ|C|1189
6Q8Y|1|BQ|A|1190
6Q8Y|1|BQ|U|1191
6Q8Y|1|BQ|C|1192
6Q8Y|1|BQ|A|1193
6Q8Y|1|BQ|G|1194
*
6Q8Y|1|BQ|C|1314
6Q8Y|1|BQ|U|1315
6Q8Y|1|BQ|C|1316
6Q8Y|1|BQ|A|1317
6Q8Y|1|BQ|A|1318
6Q8Y|1|BQ|G|1319
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AD
- 60S ribosomal protein L9-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- Ubiquitin-60S ribosomal protein L40
- Chain AU
- 60S ribosomal protein L16-A
- Chain BH
- 60S ribosomal protein L20-A
Coloring options: