IL_8C3A_054

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUCAUCAG*CUCAAG

Length

14 nucleotides

Bulged bases

8C3A|1|1|U|1187, 8C3A|1|1|C|1188, 8C3A|1|1|C|1312, 8C3A|1|1|A|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_27086.1

Basepair signature

cWW-tWW-L-tWW-cWW-L

Number of instances in this motif group

2

Unit IDs

8C3A|1|1|C|1183
8C3A|1|1|U|1184
8C3A|1|1|C|1185
8C3A|1|1|A|1186
8C3A|1|1|U|1187
8C3A|1|1|C|1188
8C3A|1|1|A|1189
8C3A|1|1|G|1190
*
8C3A|1|1|C|1310
8C3A|1|1|U|1311
8C3A|1|1|C|1312
8C3A|1|1|A|1313
8C3A|1|1|A|1314
8C3A|1|1|G|1315

Current chains

Chain 1

25S

Nearby chains

Chain 0

60S ribosomal protein L20

Chain AN

60S ribosomal protein L40-B

Chain q

60S ribosomal protein L9-B

Chain u

60S ribosomal protein L14-B

Chain w

Ribosomal protein L13