IL_6Q8Y_138

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6Q8Y|1|BQ|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_138 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.222

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6Q8Y|1|BQ|U|1218
6Q8Y|1|BQ|C|1219
6Q8Y|1|BQ|U|1220
6Q8Y|1|BQ|A|1221
6Q8Y|1|BQ|G|1222
6Q8Y|1|BQ|A|1223
6Q8Y|1|BQ|C|1224
6Q8Y|1|BQ|A|1225
6Q8Y|1|BQ|G|1226
*
6Q8Y|1|BQ|C|1283
6Q8Y|1|BQ|C|1284
6Q8Y|1|BQ|G|1285
6Q8Y|1|BQ|A|1286
6Q8Y|1|BQ|A|1287

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BH

60S ribosomal protein L20-A