IL_6Q8Y_144

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q8Y_144 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0686

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6Q8Y|1|BQ|G|1444
6Q8Y|1|BQ|U|1445
6Q8Y|1|BQ|A|1446
6Q8Y|1|BQ|G|1447
6Q8Y|1|BQ|U|1448
6Q8Y|1|BQ|A|1449
6Q8Y|1|BQ|G|1450
*
6Q8Y|1|BQ|C|2354
6Q8Y|1|BQ|G|2355
6Q8Y|1|BQ|A|2356
6Q8Y|1|BQ|A|2357
6Q8Y|1|BQ|A|2358
6Q8Y|1|BQ|C|2359

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BE

60S ribosomal protein L4-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA