IL_6Q8Y_158
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|1716, 6Q8Y|1|BQ|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q8Y_158 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1234
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Q8Y|1|BQ|C|1711
6Q8Y|1|BQ|G|1712
6Q8Y|1|BQ|G|1713
6Q8Y|1|BQ|A|1714
6Q8Y|1|BQ|A|1715
6Q8Y|1|BQ|U|1716
6Q8Y|1|BQ|U|1717
*
6Q8Y|1|BQ|G|1727
6Q8Y|1|BQ|G|1728
6Q8Y|1|BQ|A|1729
6Q8Y|1|BQ|G|1730
6Q8Y|1|BQ|A|1731
6Q8Y|1|BQ|U|1732
6Q8Y|1|BQ|G|1733
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AN
- 60S ribosomal protein L27-A
- Chain AT
- 60S ribosomal protein L43-A
- Chain AY
- 60S ribosomal protein L30
- Chain BF
- 60S ribosomal protein L19-A
- Chain BN
- 60S ribosomal protein L34-A
- Chain Y
- 40S ribosomal protein S13
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