IL_6Q95_009

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

6Q95|1|1|A|363|||F

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_009 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.306

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6Q95|1|1|G|272|||D
6Q95|1|1|G|272|||E
6Q95|1|1|C|272|||F
*
6Q95|1|1|G|363|||D
6Q95|1|1|U|363|||E
6Q95|1|1|A|363|||F
6Q95|1|1|C|364

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains