IL_6Q95_012

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6Q95|1|1|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_012 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.2063

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6Q95|1|1|C|288
6Q95|1|1|A|289
6Q95|1|1|G|290
*
6Q95|1|1|U|350
6Q95|1|1|G|351
6Q95|1|1|G|352
6Q95|1|1|G|353

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains