IL_6Q95_016

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_016 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.1723

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6Q95|1|1|U|606
6Q95|1|1|U|607
6Q95|1|1|A|608
6Q95|1|1|A|609
6Q95|1|1|G|610
*
6Q95|1|1|C|618
6Q95|1|1|G|619
6Q95|1|1|G|620
6Q95|1|1|A|621
6Q95|1|1|G|622

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15