3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
6Q95|1|1|U|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q95_044 not in the Motif Atlas
Homologous match to IL_7RQB_047
Geometric discrepancy: 0.1391
The information below is about IL_7RQB_047
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.2
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
28

Unit IDs

6Q95|1|1|C|1208
6Q95|1|1|G|1209
6Q95|1|1|A|1210
6Q95|1|1|U|1211
6Q95|1|1|G|1212
6Q95|1|1|A|1213
6Q95|1|1|A|1214
6Q95|1|1|G|1215
*
6Q95|1|1|U|1234
6Q95|1|1|G|1235
6Q95|1|1|G|1236
6Q95|1|1|A|1237
6Q95|1|1|G|1238

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain Q
50S ribosomal protein L20

Coloring options:


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