IL_6Q95_044

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6Q95|1|1|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_044 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1391

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6Q95|1|1|C|1208
6Q95|1|1|G|1209
6Q95|1|1|A|1210
6Q95|1|1|U|1211
6Q95|1|1|G|1212
6Q95|1|1|A|1213
6Q95|1|1|A|1214
6Q95|1|1|G|1215
*
6Q95|1|1|U|1234
6Q95|1|1|G|1235
6Q95|1|1|G|1236
6Q95|1|1|A|1237
6Q95|1|1|G|1238

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S ribosomal protein L20