IL_6Q95_049

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6Q95|1|1|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_049 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1286

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6Q95|1|1|C|1351
6Q95|1|1|U|1352
6Q95|1|1|A|1353
6Q95|1|1|A|1354
6Q95|1|1|G|1355
*
6Q95|1|1|C|1376
6Q95|1|1|G|1377
6Q95|1|1|A|1378
6Q95|1|1|A|1379
6Q95|1|1|G|1380

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34