3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGAAG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q95_050 not in the Motif Atlas
Homologous match to IL_4WF9_052
Geometric discrepancy: 0.223
The information below is about IL_4WF9_052
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6Q95|1|1|U|1357
6Q95|1|1|G|1358
6Q95|1|1|A|1359
6Q95|1|1|A|1360
6Q95|1|1|G|1361
*
6Q95|1|1|C|1370
6Q95|1|1|G|1371
6Q95|1|1|U|1372
6Q95|1|1|A|1373
6Q95|1|1|G|1374

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain X
50S ribosomal protein L28
Chain d
50S ribosomal protein L34

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2347 s