3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
ACUCUG*CUGU
Length
10 nucleotides
Bulged bases
6Q95|1|1|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q95_065 not in the Motif Atlas
Geometric match to IL_7A0S_062
Geometric discrepancy: 0.1475
The information below is about IL_7A0S_062
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6Q95|1|1|A|1669
6Q95|1|1|C|1670
6Q95|1|1|U|1671
6Q95|1|1|C|1672
6Q95|1|1|U|1673
6Q95|1|1|G|1674
*
6Q95|1|1|C|1990
6Q95|1|1|U|1991
6Q95|1|1|G|1992
6Q95|1|1|U|1993

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain K
50S ribosomal protein L14

Coloring options:


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