IL_6Q95_071

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

6Q95|1|1|A|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_071 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.2033

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6Q95|1|1|G|1846
6Q95|1|1|A|1847
6Q95|1|1|A|1848
6Q95|1|1|G|1849
*
6Q95|1|1|C|1893
6Q95|1|1|C|1894

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain 8

Transfer RNA; tRNA

Chain B

50S ribosomal protein L2